Excitation of the GDR and the Compressional Isoscalar Dipole State by alpha scattering

The excitation of the isovector giant dipole resonance (GDR) by alpha scattering is investigated as a method of probing the neutron excess in exotic nuclei. DWBA calculations are presented for 28O and 70Ca and the interplay of Coulomb and nuclear excitation is discussed. Since the magnitude of the Coulomb excitation amplitude is strongly influenced by the Q-value, the neutron excess plays an important role, as it tends to lower the energy of the GDR. The excitation of the compressional isoscalar dipole state in 70Ca by alpha scattering is also investigated. It is shown that the population of this latter state may be an even more sensitive probe of the neutron skin than the isovector GDR.Comment: 7 pages, 5 figures, Latex2

Eliciting preferences for attributes of Newcastle disease vaccination programmes for village poultry in Ethiopia

Newcastle disease (NCD) is an important disease of poultry, directly affecting the livelihoods of poor farmers across developing countries. Research has identified promising innovations in NCD vaccine development and field trials among village poultry have been promising. However, NCD vaccination is not currently part of village poultry extension programmes in many developing countries. Understanding the preferences for, and relative importance of, different attributes of potential vaccination programmes to prevent NCD will be crucial in designing acceptable and sustainable prevention programmes. This research employed the discrete choice experiment approach to elicit farmers’ preference for attributes of NCD vaccination programmes for village poultry in rural Ethiopia. The choice experiment survey was conducted on 450 smallholder farmers. The relative importance of attributes of NCD vaccines to farmers was estimated using a random parameter logit regression model. The preferred NCD vaccine programme had greater bird-level protection (i.e. greater capacity to reduce mortality should NCD occur in a flock), was delivered by animal health development agents, and could be administered via drinking water. Results from simulations on changes in attribute levels revealed that bird-level protection capacity and delivery of vaccine by animal heath extension affect farmers’ preferences more than other attributes. These findings suggest that it is important to ensure NCD vaccine programmes offer reasonable capacity to protect against mortality. It also suggests the need to understand farmers’ preferred vaccine delivery mechanisms and route of vaccine administration for a wider acceptance of vaccine

Patterns of Mesenchymal Condensation in a Multiscale, Discrete Stochastic Model

Cells of the embryonic vertebrate limb in high-density culture undergo chondrogenic pattern formation, which results in the production of regularly spaced “islands” of cartilage similar to the cartilage primordia of the developing limb skeleton. The first step in this process, in vitro and in vivo, is the generation of “cell condensations,” in which the precartilage cells become more tightly packed at the sites at which cartilage will form. In this paper we describe a discrete, stochastic model for the behavior of limb bud precartilage mesenchymal cells in vitro. The model uses a biologically motivated reaction–diffusion process and cell-matrix adhesion (haptotaxis) as the bases of chondrogenic pattern formation, whereby the biochemically distinct condensing cells, as well as the size, number, and arrangement of the multicellular condensations, are generated in a self-organizing fashion. Improving on an earlier lattice-gas representation of the same process, it is multiscale (i.e., cell and molecular dynamics occur on distinct scales), and the cells are represented as spatially extended objects that can change their shape. The authors calibrate the model using experimental data and study sensitivity to changes in key parameters. The simulations have disclosed two distinct dynamic regimes for pattern self-organization involving transient or stationary inductive patterns of morphogens. The authors discuss these modes of pattern formation in relation to available experimental evidence for the in vitro system, as well as their implications for understanding limb skeletal patterning during embryonic development

Validation of the ¹³C-octanoic acid breath test for measurement of equine gastric emptying rate of solids using radioscintigraphy

Reasons for performing study: Disordered gastric motility may be a significant factor in the pathogenesis of many equine conditions. Although tests for liquid phase emptying rate have been validated in the horse, there are no effective tests for solid phase emptying measurement that can be performed routinely in the field. Objectives: The objective of this study was the assessment of a novel stable isotope technique, the <sup>13</sup>C-octane acid breath test (<sup>13</sup> C-OABT), for the measurement of gastric emptying of solid ingesta, by direct comparison with the optimum method of gastric scintigraphy. Methods: To facilitate dual measurement of gastric emptying, a test meal was used containing baked egg yolk labelled with both <sup>13</sup>C-octanoic acid and (99m)technetium sulphur colloid. Simultaneous, serial lateral gastric scintigraphs and expiratory breath samples were obtained in 12 healthy horses after voluntary ingestion of the test meal. Analysis of breath (CO2)-C-13:(CO2)-C-12 ratio was performed by continuous flow isotope ratio mass spectrometry. Power regression was used to determine the gastric emptying coefficient, the gastric half-emptying time (t(1/2)) and duration of the lag phase (t(lag)). Results: Significant correlations (P < 0.001) were found between the 2 techniques for measurement of both t(1/2) and t(lag). In addition, scintigraphic left t(1/2) was correlated significantly to breath test gastric emptying coefficient (P < 0.001). Conclusions: It was concluded that the <sup>13</sup>C-octanoic acid breath test is a reliable diagnostic procedure to measure gastric emptying rate of solids in the horse. Potential relevance: Being safe, noninvasive and easy to perform, this test has potential value as; both sensitive diagnostic modality and humane research tool for motility studies

Farmers' willingness to pay for a village poultry vaccine service in Ethiopia: prospect for enhancing rural livelihoods

This research examines farmers’ willingness to pay for village poultry vaccine programmes using data from 400 household heads from two districts in Ethiopia, Horro and Jarso. The study applied a contingent valuation method to elicit farmers’ willingness to pay for village poultry vaccine services. Two hypothetical vaccine programmes were designed for Newcastle disease and Gumboro disease. Both parametric and non-parametric approaches were employed in data analysis. The results show that farmers recognise the benefits of the vaccine programme and that many would be willing to pay for it. Results from non-parametric estimates produced households’ mean willingness to pay Ethiopian Birr (ETB) 80 up to ETB 87 per year based on vaccine programme type. This demonstrates the potential and prospect of reducing the impact of infectious poultry diseases and enhancing rural livelihoods through village poultry. Exponential probit analysis revealed that farmers’ willingness to pay for village poultry vaccine service is influenced by age, education level, and region of respondents. Younger and more-educated farmers were more likely to pay for village poultry vaccine services and farmers from Horro, a relatively food secure and educated area, were more likely to pay than those from the less food secure Jarso district

Optimization and Control of Agent-Based Models in Biology: A Perspective

Agent-based models (ABMs) have become an increasingly important mode of inquiry for the life sciences. They are particularly valuable for systems that are not understood well enough to build an equation-based model. These advantages, however, are counterbalanced by the difficulty of analyzing and using ABMs, due to the lack of the type of mathematical tools available for more traditional models, which leaves simulation as the primary approach. As models become large, simulation becomes challenging. This paper proposes a novel approach to two mathematical aspects of ABMs, optimization and control, and it presents a few first steps outlining how one might carry out this approach. Rather than viewing the ABM as a model, it is to be viewed as a surrogate for the actual system. For a given optimization or control problem (which may change over time), the surrogate system is modeled instead, using data from the ABM and a modeling framework for which ready-made mathematical tools exist, such as differential equations, or for which control strategies can explored more easily. Once the optimization problem is solved for the model of the surrogate, it is then lifted to the surrogate and tested. The final step is to lift the optimization solution from the surrogate system to the actual system. This program is illustrated with published work, using two relatively simple ABMs as a demonstration, Sugarscape and a consumer-resource ABM. Specific techniques discussed include dimension reduction and approximation of an ABM by difference equations as well systems of PDEs, related to certain specific control objectives. This demonstration illustrates the very challenging mathematical problems that need to be solved before this approach can be realistically applied to complex and large ABMs, current and future. The paper outlines a research program to address them

Non-adiabatic corrections to elastic scattering of halo nuclei

We derive the formalism for the leading order corrections to the adiabatic approximation to the scattering of composite projectiles. Assuming a two-body projectile of core plus loosely-bound valence particle and a model (the core recoil model) in which the interaction of the valence particle and the target can be neglected, we derive the non-adiabatic correction terms both exactly, using a partial wave analysis, and using the eikonal approximation. Along with the expected energy dependence of the corrections, there is also a strong dependence on the valence-to-core mass ratio and on the strength of the imaginary potential for the core-target interaction, which relates to absorption of the core in its scattering by the target. The strength and diffuseness of the core-target potential also determine the size of the corrections. The first order non-adiabatic corrections were found to be smaller than qualitative estimates would expect. The large absorption associated with the core-target interaction in such halo nuclei as Be11 kills off most of the non-adiabatic corrections. We give an improved estimate for the range of validity of the adiabatic approximation when the valence-target interaction is neglected, which includes the effect of core absorption. Some consideration was given to the validity of the eikonal approximation in our calculations.Comment: 14 pages with 10 figures, REVTeX4, AMS-LaTeX v2.13, submitted to Phys. Rev.

HapZipper: sharing HapMap populations just got easier

The rapidly growing amount of genomic sequence data being generated and made publicly available necessitate the development of new data storage and archiving methods. The vast amount of data being shared and manipulated also create new challenges for network resources. Thus, developing advanced data compression techniques is becoming an integral part of data production and analysis. The HapMap project is one of the largest public resources of human single-nucleotide polymorphisms (SNPs), characterizing over 3 million SNPs genotyped in over 1000 individuals. The standard format and biological properties of HapMap data suggest that a dedicated genetic compression method can outperform generic compression tools. We propose a compression methodology for genetic data by introducing H ap Z ipper , a lossless compression tool tailored to compress HapMap data beyond benchmarks defined by generic tools such as gzip , bzip2 and lzma . We demonstrate the usefulness of H ap Z ipper by compressing HapMap 3 populations to <5% of their original sizes. H ap Z ipper is freely downloadable from https://bitbucket.org/pchanda/hapzipper/downloads/HapZipper.tar.bz

Coulomb and nuclear breakup of 8^8B

The cross sections for the ($^8$B,$^7$Be-$p$) breakup reaction on $^{58}$Ni and $^{208}$Pb targets at the beam energies of 25.8 MeV and 415 MeV have been calculated within a one-step prior-form distorted-wave Born approximation. The relative contributions of Coulomb and nuclear breakup of dipole and quadrupole multipolarities as well as their interference have been determined. The nuclear breakup contributions are found to be substantial in the angular distributions of the $^7$Be fragment for angles in the range of 30$^\circ$ - 80$^\circ$ at 25.8 MeV beam energy. The Coulomb-nuclear interference terms make the dipole cross section larger than that of quadrupole even at this low beam energy. However, at the incident energy of 415 MeV, these effects are almost negligible in the angular distributions of the ($^7$Be-p) coincidence cross sections at angles below 4$^\circ$.Comment: Revised version, accepted for publication in Phys. Rev.